Pricing

Choose your organization type
Academic
Biopharma

Free

For pilot projects & educational use
$0
Free forever
Get started
Up to 250 000 cells in max 10 datasets
Analysis and visualization tools for scRNA-Seq, CITE-Seq, Hashtag multiplexed data
Tools for merging and subsetting datasets
Import datasets from Nygen Database
Create publicly shareable links for your datasets
In app support and onboarding

Researcher

For PhD students, PostDocs & PIs
$99/mo
Paid annually, or $149 monthly
Subscribe
Up to 1 000 000 cells in max 40 datasets
Everything in Free, plus:
Advanced plots and customization
Advanced analysis tools
No rate limits on analysis functions, unlimited analysis versions
Automated cell type annotation with evidence gathering from literature

Lab

Popular
Ideal when multiple people in lab collaborate
$249/mo
Paid annually, or $399 monthly
Subscribe
Up to 5 000 000 cells in max 200 datasets
Everything in Researcher, plus:
Includes 5+ seats (only 1 PI seat). Flexibility to add additional members
Privately share and transfer datasets to lab members
User management interface (coming soon)
Consolidated billing

Institution

Best value for departments and institutes
Contact us
For Custom Pricing
Contact us
Customized to your needs
Everything in Lab, plus:
Onboarding seminars and webinars included
Usage data and metrics
Dedicated bioinformatician to provide ongoing support

Plans and features

Free

Researcher

Lab

Institution

Batch Analysis
Cell filtering
Custom HVG selection
Batch correction
k-NN graph creation
PCA
UMAP
tSNE
Leiden clustering
Paris clustering

Free

Researcher

Lab

Institution

Interactive Analysis
Compositional Analysis
Custom Differential Gene Expression analysis
Limited
Pseudotime/Trajectory analysis
Limited
GSEA analysis
Limited
Gene signature
Limited
Marker search
Limited
Import label from Nygen Database
Limited
Cross dataset labeling
Pseudobulking
Imputation

Free

Researcher

Lab

Institution

Automated Cell Annotation
Confidence score
Cell Ontology linking
Anomaly Detection
Literature evidence

Free

Researcher

Lab

Institution

Admin & Security
Encryption of data at rest and transit
Full backup of the database
Logs for data access
SSO (coming soon)
MFA (coming soon)
ISO-27001 and SOC 2 Compliance

Free

Researcher

Lab

Institution

Visualization
Dot Plot
Scatter Plot
Volcano Plot
Radar Plot
Violin Plot
Box Plot
Bar Plot
Stacked Bar Plot
PNG download
SVG download
CSV download
Customization

Free

Researcher

Lab

Institution

Supported modalities
scRNA-Seq from droplet and plate methods
CITE-Seq
VDJ sequencing
Spatial (Visium)

Basic plan

$96/year
Basic features for up to 10 users with everything you need.
Get started

Business plan

$192/year
Advanced features and reporting, better workflows and automation.
Get started

Enterprise plan

$384/year
Personalised service and enterprise security for large teams.
Get started
User access
Basic features
Saved reports
10
20
Unlimited
Individual data
20GB
40GB
Unlimited
Support
Automated workflows
200+ integrations
Reporting and analytics
Analytics
Basic
Advanced
Advanced
Export reports
Scheduled reports
API access
Advanced reports
Saved reports
Customer properties
Custom fields
User access
SSO/SAML authentication
Advanced permissions
Audit log
Data history
Get started
Chat to sales
Get started
Chat to sales
Get started
Chat to sales

Free

Researcher

Lab

Institution

Sharing & Collaboration
Create public links for data
Share data privately
Transfer data to lab member
Admin portal

Free

Researcher

Lab

Institution

Data Management
Merge (Concatenate) datasets
Extract cells from a dataset
Demulitplex HTO multiplex data
Import datasets from Nygen Database
Bulk metadata editor
Import External Analysis
Unlimited Analysis versions
Download raw matrix

Basic plan

$96/year
Basic features for up to 10 users with everything you need.
Get started

Business plan

$192/year
Advanced features and reporting, better workflows and automation.
Get started

Enterprise plan

$384/year
Personalised service and enterprise security for large teams.
Get started
User access
Basic features
Saved reports
10
20
Unlimited
Individual data
20GB
40GB
Unlimited
Support
Automated workflows
200+ integrations
Reporting and analytics
Analytics
Basic
Advanced
Advanced
Export reports
Scheduled reports
API access
Advanced reports
Saved reports
Customer properties
Custom fields
User access
SSO/SAML authentication
Advanced permissions
Audit log
Data history
Get started
Chat to sales
Get started
Chat to sales
Get started
Chat to sales

Free

Free trial for testing
$0
Free forever
Get started
Up to 250 000 cells in max 10 datasets
Analysis and visualization tools for scRNA-Seq, CITE-Seq, Hashtag multiplexed data
Tools for merging and subsetting datasets
Import datasets from Nygen Database
Create publicly shareable links for your datasets
In app support and onboarding

Individual

Ideal for an individual scientist or researcher
$749/mo
Paid annually or $599 monthly
Subscribe
Up to 1 000 000 cells in max 40 datasets
Everything in Free, plus:
For commercial use
Advanced plots and customization
Advanced analysis tools
No rate limits on analysis functions, unlimited analysis versions
Automated cell type annotation with evidence gathering from literature

Team

Popular
Perfect choice for a collaborative research team
$1849/mo
Paid annually or $1299 monthly
Subscribe
Up to 5 000 000 cells in max 100 datasets
Everything in Individual, plus:
ISO 27001 / SOC 2 compliant platform
Includes 5+ seats (only 1 admin seat). Flexibility to add additional members
Dedicated bioinformatics support (up to 40 hours) for academic publication or IND-enabling study (annual license)
Privately share and transfer datasets to lab members
User management interface (coming soon)
Consolidated billing

Enterprise

Best for companies using single-cell omics
Contact us
For Custom Pricing
Contact us
Customized to your needs
Everything in Team, plus:
ISO 27001 / SOC 2 audit reports
Bioinformatics support through FTE model  
Drug Discovery modules
Cell atlasing project support
ELN system integration
Onboarding seminars and webinars included
Custom development of new analysis modules
SSO (coming soon)
Usage data and metrics

Plans and features

Free

Individual

Team

Enterprise

Batch Analysis
Cell filtering
Custom HVG selection
Batch correction
k-NN graph creation
PCA
UMAP
tSNE
Leiden clustering
Paris clustering

Free

Individual

Team

Enterprise

Interactive Analysis
Compositional analysis
Custom differential gene expression analysis
Limited
Pseudotime/ trajectory analysis
Limited
GSEA analysis
Limited
Gene signature
Limited
Marker search
Limited
Import label from Nygen Database
Limited
Cross dataset labeling
Pseudobulking
Imputation
Drug discovery AI module

Free

Individual

Team

Enterprise

Automated Cell Annotation
Confidence score
Cell Ontology linking
Anomaly detection
Literature evidence

Free

Individual

Team

Enterprise

Admin & Security
Encryption of data at rest and transit
Full backup of the database
Logs for data access
SSO (coming soon)
MFA (coming soon)
ISO-27001 / SOC 2 compliance
ISO-27001 / SOC 2 audit reports
Bioinformatics support through FTE model  
Advanced knowledge base integration

Free

Individual

Team

Enterprise

Visualization
Dot Plot
Scatter Plot
Volcano Plot
Radar Plot
Violin Plot
Box Plot
Bar Plot
Stacked Bar Plot
PNG Download
SVG Download
CSV Download
Customization

Free

Individual

Team

Enterprise

Supported modalities
scRNA-Seq from droplet and plate methods
CITE-Seq
VDJ sequencing
Spatial (Visium)

Basic plan

$96/year
Basic features for up to 10 users with everything you need.
Get started

Business plan

$192/year
Advanced features and reporting, better workflows and automation.
Get started

Enterprise plan

$384/year
Personalised service and enterprise security for large teams.
Get started
User access
Basic features
Saved reports
10
20
Unlimited
Individual data
20GB
40GB
Unlimited
Support
Automated workflows
200+ integrations
Reporting and analytics
Analytics
Basic
Advanced
Advanced
Export reports
Scheduled reports
API access
Advanced reports
Saved reports
Customer properties
Custom fields
User access
SSO/SAML authentication
Advanced permissions
Audit log
Data history
Get started
Chat to sales
Get started
Chat to sales
Get started
Chat to sales

Free

Individual

Team

Enterprise

Sharing & Collaboration
Create public links for data
Share data privately
Transfer data to lab member
Admin portal

Free

Individual

Team

Enterprise

Data Management
Merge (Concatenate) datasets
Extract cells from a dataset
Demulitplex HTO multiplex data
Import datasets from Nygen Database
Bulk metadata editor
Import external analysis
Unlimited analysis versions
Download raw matrix
ELN system integration

Basic plan

$96/year
Basic features for up to 10 users with everything you need.
Get started

Business plan

$192/year
Advanced features and reporting, better workflows and automation.
Get started

Enterprise plan

$384/year
Personalised service and enterprise security for large teams.
Get started
User access
Basic features
Saved reports
10
20
Unlimited
Individual data
20GB
40GB
Unlimited
Support
Automated workflows
200+ integrations
Reporting and analytics
Analytics
Basic
Advanced
Advanced
Export reports
Scheduled reports
API access
Advanced reports
Saved reports
Customer properties
Custom fields
User access
SSO/SAML authentication
Advanced permissions
Audit log
Data history
Get started
Chat to sales
Get started
Chat to sales
Get started
Chat to sales

Want the full feature breakdown?

Visit this page on a desktop to get the full details. A tablet & mobile-friendly view is coming soon!
Pricing

Frequently asked questions

Plans & Pricing
Usage & Limits
Account & Billing
Data Security
Support & Training
Custom Solutions

Is the Free plan really free?

Yes, it's free forever with limited features and usage quotas. Perfect for exploring our platform and running pilot projects. There are no hidden charges or credit card requirements.

What subscription periods are available?

We offer both monthly and annual billing cycles. Choose annual subscription to save 33% compared to monthly payments. You can change your billing cycle when renewing your subscription.

Do you offer academic discounts?

Yes, we offer significant discounts for academic institutions. Our academic pricing is typically 95% lower than single-cell sequencing costs and can reduce bioinformatics expenses by 4x-10x. Contact sales@nygen.io for detailed academic pricing.

How can I purchase a license?

Purchase directly through the app using credit cards via our secure Stripe payment gateway. We accept all major credit cards. For assistance with purchasing, contact sales@nygen.io.

Can I get an invoice instead?

Yes, we offer invoice payment options for Lab, Institution, and Enterprise tiers. This is particularly useful for institutional purchases and expense tracking. Contact sales@nygen.io to arrange invoice payment.

What are the Free tier limits?

Free tier features have daily usage limits that reset every 24 hours. This ensures fair usage while still providing access to essential functionality. Check the platform interface for current usage status.

How many cells can a dataset contain?

There is no hard limit on the number of cells a dataset can contain. Our platform is designed to handle datasets of any size efficiently, though larger datasets may take longer to process.

How are datasets counted towards my quota?

Datasets are counted in increments of 25,000 cells for quota purposes. For example, a dataset with 70,000 cells counts as 3 datasets (75,000 cells worth of quota). This helps us maintain fair resource allocation across different use cases.

What happens if I exceed my data quota?

When approaching your quota limit, you'll receive notifications. If you exceed it, contact sales@nygen.io to discuss upgrade options. We'll work with you to find the most cost-effective solution for your needs.

How do lab licenses work?

Lab licenses provide shared data quota among all team members, allowing flexible usage based on project needs. Team administrators can manage access and resource allocation through our user management interface.

Can I change my plan?

Yes, you can upgrade or downgrade your plan anytime through our support team. Contact support@nygen.io for plan changes.

How does subscription renewal work?

Subscriptions automatically renew at the end of each billing period. You can cancel anytime before the next billing cycle through the platform or by contacting support@nygen.io.

How is my data protected?

We implement comprehensive security measures including:    
- Industry-standard encryption for data in transit and at rest    
- Robust access control systems    
- Point-in-time recovery capabilities    
- 24-hour backup routines    
- ISO 27001 and SOC 2 compliant infrastructure    

Visit our trust center for detailed security documentation.

Where is the data hosted?

We use Amazon Web Services (AWS) infrastructure with 20 global locations available for data residency. This ensures compliance with local data regulations and optimal performance. You can choose your preferred data center location. 

What happens to published data after subscription ends?

Published datasets remain permanently accessible under Creative Commons license, ensuring your research remains available to the scientific community. This applies regardless of your subscription status.

What support is included?

All plans include technical support via support@nygen.io. Higher tiers receive priority support with faster response times. Our support team is available to help with technical questions, usage guidance, and best practices.

Is training available?

Yes, we provide comprehensive training resources including:    
- Documentation and tutorials    
- Onboarding assistance    
- Regular webinars    
- Custom training sessions for teams    

Contact support@nygen.io to access training resources.

Do you offer custom pricing?

Yes, we offer customized pricing plans for teams with specific needs. Contact sales@nygen.io with details about your:    
- Team size    
- Expected data volume    
- Feature requirements    

We'll create a tailored solution for you.

Can I get a demo?

Yes, we offer personalized demonstrations of our platform. Email sales@nygen.io to schedule a demo where we'll showcase relevant features for your use case and answer any questions.

Can’t find the answer you’re looking for?

Feel free to get in touch with us.
Contact us